Difference Between Prokaryotic And Eukaryotic Transcription

Difference Between Prokaryotic And Eukaryotic Transcription

Irshad AnwarUpdated on 24 Jul 2025, 11:33 AM IST

Transcription in prokaryotes and eukaryotes is the process of making RNA from DNA. Though the basic process is the same, the transcription process is different in both cell types. Prokaryotic transcription is simple and quick, while eukaryotic transcription is more complex and controlled. The difference between the prokaryotic and eukaryotic transcription processes is mainly in location, enzymes, and steps involved.

This Story also Contains

  1. What Is Transcription?
  2. Structural Differences Between Prokaryotes and Eukaryotes in Transcription
  3. Central Dogma Of Molecular Biology
  4. Major Differences Between Prokaryotic And Eukaryotic Transcription
  5. MCQs on Transcription
Difference Between Prokaryotic And Eukaryotic Transcription
Difference Between Prokaryotic And Eukaryotic Transcription

Prokaryotic transcription is simple and happens in the cytoplasm. Eukaryotic transcription is complex and takes place in the nucleus, with more steps, like RNA processing. These differences in the transcription process ensure that gene expression is well managed in each type of cell. The molecular basis of inheritance is seen in transcription, where DNA makes RNA.

What Is Transcription?

The process of transcription is among the most fundamental biological processes that involve the copying of DNA sequences of genes into RNA. The process of gene expression is preliminary to any other function executed by a cell. Transcription is the procedure for synthesising a complementary RNA molecule by reading the DNA strand through the enzyme RNA polymerase.

The difference between prokaryotic and eukaryotic transcriptions is one of the major and main areas of study by biologists. It shows how complex and evolved the mechanisms of a cell could be. For example, mechanisms of bacterial transcription serve as targets for antibiotic development, whereas eukaryotic transcription can provide valuable clues to the study of cancer and gene therapy. of inheritance is seen in transcription, where DNA makes RNA.

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Structural Differences Between Prokaryotes and Eukaryotes in Transcription

Prokaryotes are simple, single-celled organisms without a nucleus. Bacteria are common examples of prokaryotes. Their transcription process is simple and happens in the cytoplasm. In contrast, eukaryotes have a nucleus and are more complex. Plants, animals, and kingdom fungi are eukaryotes. Their transcription process is complex, with many steps and RNA processing.

Prokaryotic cells are much simpler structurally. They have no membrane-bound organelles and possess only a single circular chromosome attached within the nucleoid region of the cell. On the other hand, eukaryotes have their linear chromosomes maintained in the nucleus, along with different kinds of membrane-bound organelles. These structural differences affect how transcription works in both cell types.

Central Dogma Of Molecular Biology

The central dogma of molecular biology shows how DNA makes RNA and then proteins. Both prokaryotic and eukaryotic transcription follow this step. But the transcription process is simple in prokaryotes and complex in eukaryotes. This difference helps each cell type complete the molecular basis of inheritance.

First, DNA is transcribed into RNA. Then, RNA is translated into proteins. Transcription makes RNA from a DNA template. This RNA can be rRNA, tRNA, or mRNA. mRNA carries the message to make proteins.

Commonly Asked Questions

Q: What is the function of the 5' cap in eukaryotic mRNA?
A:

The 5' cap is a modified guanine nucleotide added to the 5' end of eukaryotic mRNA. It protects the mRNA from degradation, aids in export from the nucleus, and helps initiate translation.

Q: What is the TATA box, and why is it important in eukaryotic transcription?
A:

The TATA box is a DNA sequence found in many eukaryotic promoters. It serves as a binding site for the TATA-binding protein (TBP), which is part of the general transcription factor TFIID. The TATA box helps position the RNA polymerase II at the correct starting point for transcription.

Q: What are introns, and why are they significant in eukaryotic transcription?
A:

Introns are non-coding sequences within genes that are transcribed but removed from the mRNA during processing. They are found in eukaryotes but rarely in prokaryotes. Introns allow for alternative splicing, increasing protein diversity from a single gene.

Major Differences Between Prokaryotic And Eukaryotic Transcription

The major differences between prokaryotic and eukaryotic transcription are based on cell structure and process steps. In prokaryotes, transcription is simple and quick. In eukaryotes, transcription is complex and occurs in the nucleus. These differences affect how genes are expressed in each cell type.

Feature

Prokaryotic Transcription

Eukaryotic Transcription

Location of Transcription

Cytoplasm

Nucleus

RNA Polymerases

Single RNA polymerase

Multiple RNA polymerases (I, II, III)

Promoter Recognition

Sigma factors

Transcription factors and TATA box

Initiation Complex

Simple (RNA polymerase and sigma factor)

Complex (RNA polymerase II, general transcription factors)

mRNA Processing

Minimal to none

Extensive (capping, splicing, polyadenylation)

Regulation of Transcription

Operons

Enhancers, silencers, and complex regulatory elements

Transcription-Translation Coupling

Simultaneous in the cytoplasm

Separate (transcription in nucleus, translation in cytoplasm)

RNA Stability

Short-lived mRNA

More stable mRNA (due to processing and protective features)

Post-Transcriptional Modifications

Rare

Common (alternative splicing, RNA editing)

Chromatin Structure

Not present (naked DNA)

Present (DNA wrapped around histones forming nucleosomes)

Introns and Exons

Usually absent (continuous coding sequences)

Present (genes split into exons and introns)

Response to Environmental Changes

Rapid and direct

Slower and more regulated response

Diagram: Prokaryotic And Eukaryotic Transcription

Prokaryotic And Eukaryotic Transcription

Commonly Asked Questions

Q: What is the main difference between prokaryotic and eukaryotic transcription?
A:

The main difference is the cellular location where transcription occurs. In prokaryotes, transcription happens in the cytoplasm since there's no nucleus. In eukaryotes, transcription takes place in the nucleus, where the DNA is located.

MCQs on Transcription

Question: The transcription of DNA to a molecule of messenger RNA occurs:

  1. On the ribosomes

  2. In the cytosol

  3. In the nucleus

  4. only during cell division

Answer: The RNA polymerase enzyme is essential to the production of mRNA during transcription because it moves through the DNA strand and puts the matching ribonucleotides together. An essential bridge in the transfer of genetic information from DNA to protein synthesis is created as a result, producing a complementary mRNA strand.

Option (A) is incorrect because the ribosome is the site of protein synthesis in the cell.

Option (B) is incorrect.

Option (D) is incorrect

Hence, the correct option is 3) In the nucleus

Question: The enzyme that performs transcription is ____________.

  1. DNA polymerase

  2. DNA ligase

  3. RNA polymerase

  4. Reverse transcriptase

Answer: 1) DNA polymerase that catalyzes DNA replication

2) DNA ligases catalyze the formation of phosphodiester bonds at single-strand breaks in double-stranded DNA.

3) DNA-dependent RNA polymerase catalyzes transcription on one strand of the DNA

4) Reverse transcriptase catalyzes the RNA-dependent polymerization of DNA and is responsible for maintaining genetic information in the more stable form of DNA.

Hence, the correct answer is option 3) RNA polymerase.

Question: Which of the following is a key difference between prokaryotic and eukaryotic transcription units?

  1. Prokaryotic transcription units contain both introns and exons, while eukaryotic transcription units contain only exons.

  2. Prokaryotic transcription units do not contain a promoter region, while eukaryotic transcription units do.

  3. Eukaryotic transcription units are transcribed by RNA polymerase II, while prokaryotic transcription units are transcribed by RNA polymerase I.

  4. Prokaryotic transcription units contain multiple genes, while eukaryotic transcription units contain only one gene.

Answer: Prokaryotic transcription units contain multiple genes, while eukaryotic transcription units contain only one gene. Prokaryotic transcription units typically contain multiple genes arranged in an operon, which is a single transcription unit that produces multiple mRNAs. In contrast, eukaryotic transcription units generally contain a single gene that is transcribed into a single mRNA molecule.

Incorrect option 1. Prokaryotic transcription units contain both introns and exons, while eukaryotic transcription units contain only exons.

This option is incorrect. Prokaryotic transcription units do not contain introns and exons, as these structures are unique to eukaryotic genes. Prokaryotic genes are typically organized into operons, which are clusters of functionally related genes transcribed as a single mRNA molecule.

Incorrect option 2. Prokaryotic transcription units do not contain a promoter region, while eukaryotic transcription units do. This option is incorrect. Both prokaryotic and eukaryotic transcription units contain a promoter region, which is necessary for the initiation of transcription. The promoter region is the DNA sequence that RNA polymerase recognizes and binds to to initiate transcription.

Incorrect option 3. Eukaryotic transcription units are transcribed by RNA polymerase II, while prokaryotic transcription units are transcribed by RNA polymerase I. This option is partially correct. Eukaryotic transcription units are transcribed by RNA polymerase II, which is responsible for transcribing protein-coding genes. However, prokaryotic transcription units are transcribed by RNA polymerase holoenzyme, which consists of RNA polymerase core enzymes and other factors.

Hence, the correct answer is option 4) Prokaryotic transcription units contain multiple genes, while eukaryotic transcription units contain only one gene.

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Frequently Asked Questions (FAQs)

Q: Why do eukaryotes need multiple RNA polymerases?
A:

One of the features that distinguish eukaryotes from prokaryote-like Archaea is the possession of multiple RNA polymerases (I, II, III) that specialise in the transcription of different RNA types. For instance, in eukaryotes, it is RNA polymerase I that transcribes the rRNA, while RNA polymerase II synthesises mRNA. Lastly, RNA polymerase III synthesises tRNA and other small RNAs. For this reason, more fine and controlled gene expression is possible.

Q: How does mRNA compare after processing in prokaryotes versus eukaryotes?
A:

Usually, in prokaryotes, mRNA is directly transcribed and translated with no noticeable modification. In eukaryotes, mRNA undergoes intensive processing, normally the inclusion of 5' capping, splicing to remove the introns, and 3' polyadenylation. It is requisite for mRNA stability and the efficiency of translation.

Q: What is the role of transcription factors in eukaryotic transcription?
A:

Transcription factors are proteins involved in the initiation and regulation of eukaryotic transcription. They bind to specific DNA sequences, probably recruiting RNA polymerase II and other essential components to form the transcription initiation complex that goes on to control gene expression.