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Quick Facts

Medium Of InstructionsMode Of LearningMode Of Delivery
EnglishSelf StudyVideo and Text Based

Courses and Certificate Fees

Fees InformationsCertificate AvailabilityCertificate Providing Authority
INR 12594yesUC San Diego

The Syllabus

  • Welcome!
  • The Art of Computational Problem Formulation
  • A Short Biological Intro

  • Lectures (Optional)
  • Interactive Text (Powered by Stepik)
  • Programming Challenge 1-1: Minimum Number of Coins to Make Change
  • Programming Challenge 1-2: Length of a Longest Path in a Grid
  • Programming Challenge 1-3: Longest Common Subsequence of Two Strings
  • Programming Challenge 1-4: Longest Path in a DAG

  • Lectures (Optional)
  • Interactive Text (Powered by Stepik)
  • Programming Challenge 1-5: Global Alignment
  • Programming Challenge 1-6: Local Alignment
  • Programming Challenge 1-7: Edit Distance
  • Programming Challenge 1-8: Fitting Alignment
  • Programming Challenge 1-9: Overlap Alignment
  • Programming Challenge 1-10: Alignment with Affine Gap Penalties
  • Programming Challenge 1-11: Middle Edge in Alignment Graph
  • Programming Challenge 1-12: Global Alignment in Linear Space
  • Programming Challenge 1-13: Multiple Alignment

  • Lectures (Optional)
  • Interactive Text (Powered by Stepik)
  • Programming Challenge 1-14: Probability of a Path in an HMM'
  • Programming Challenge 1-15: Probability of an Outcome Given a Hidden Path
  • Programming Challenge 1-16: Finding an Optimal Hidden Path
  • Programming Challenge 1-17: Likelihood of an Outcome

  • Lectures (Optional)
  • Interactive Text (Powered by Stepik)
  • Programming Challenge 1-18: Constructing a Profile HMM
  • Programming Challenge 1-19: Profile HMM with Pseudocounts
  • Programming Challenge 1-20: Sequence Alignment with a Profile HMM
  • Programming Challenge 1-21: HMM Parameter Estimation
  • Programming Challenge 1-22: HMM Parameter Estimation with Viterbi Learning
  • Programming Challenge 1-23: Soft Decoding
  • Programming Challenge 1-24: Baum-Welch Learning

Instructors

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