Yes nowadays most of the Higher Technical Institutes like IITs, NITs, BITS Pilani have relaxed their Admission Criteria and accept B.Tech students from Branches like EEE  ECE or IT along with a good GATE CSE Score.

For more information about ME/MTech in CSE do follow the link below

https://engineering.careers360.com/colleges/list-of-me-mtech-in-computer-science-engineering-colleges-in-india

Dear student,

Yes you can pursue m.tech in cse after completing b.tech in eee. For that you need to crack gate in cse and not eee. That means you need to study b.tech cse syllabus to be eligible for admission m.tech in institute's including the best ones of our country like iit's, nit's, iisc, etc. Also very few of the Institutes put constraint on this advantage. So check the eligibility criteria of the colleges. For more info visit the following link:

https://engineering.careers360.com/colleges/list-of-me-mtech-in-computer-science-engineering-colleges-in-india