Dear student,

Yes, you can give your partial admission fees, by any Bank debit card.
The main thing is - If you want to retain your josaa seat, then you have to pay, the partial admission fees.
Actually it is recommended that you use sbi debit cards, for no Bank charges. Otherwise from other bank debit cards, a nominal bank charges is also charged by the bank ( like Rs. 9 or 10 ).
So, no problem, you can give the partial admission fees via other bank debit cards too.

Also check out the following link to know more about josaa instructions :-
https://josaa.nic.in/webinfo/File/GetFile?FileId=24&LangId=P