JoSAA/CSAB, the counselling and seat allotment authority will take into account the following factors before allocating the highest possible seat according to candidates’ choices:

1. Category [GEN, OBC-NCL, SC, etc.] of the candidate

2. All India Rank (AIR) of the candidate in JEE Main 2017 rank list(s)

3. As per the priority order of choices by the candidates for academic programmes and institutes

4. Availability of seats in different seat categories/seat quotas for which the candidate is eligible

5. Business rules

Dear Suresh
It's obviously mains score only. I got your point.  Let me explain you that basically if you get more marks in physics than any another subject in mains your JEE main rank will be great but mathematics,  chemistry we can't see the same.. All your answered have impact on the rank. That's it.

All the best.

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