• College of Agriculture, Shivajinagar, Pune
• College of Agriculture, Old Pune Benglore Road, Rajaram College Near Shivaji University, Vidyanagar, Kolhapur, Tal. Karveer, Dist. Kolhapur
• College of Agriculture, Parola Road, Dhule
• College of Agriculture, Dhule Road, Nandurbar
• Yashwantrao Chavan College of Agriculture, Post Box No.80, Karad, Dist. Satara 
• College of Agriculture, Muktainagar, Dist. Jalgaon (MPKV)
• College of Agriculture, Akola 
• College of Agriculture, Nagpur
• College of Agriculture, At. Sonapur, Gadchiroli 
• Shri Shivaji Agriculture College, Morshi Road, Amravati

Hii aspirant. 

Some of the best Government affiliated College of Agriculture in India are- 

• National Dairy Research Institute (NDRI), Karnal
• Indian Agricultural Research Institute (IARI), Delhi
• Acharya N.G. Ranga Agricultural University (ANGRAU), Hyderabad -
• Chaudhary Charan Singh Haryana Agricultural University (CCSHAU), Hisar
• University of Agricultural Sciences (UAS), Bangalore
• Tamil Nadu Agricultural University (TNAU), Coimbatore
• G B Pant University of Agriculture and Technology (GBPUA&T), Uttarakhand
• Punjab Agricultural University (PAU), Ludhiana
• Indian Veterinary Research Institute (IVRI)
• Central Institute of Fisheries Education (CIFE), Mumbai –

These are the best government colleges for agriculture.

Hope it helps. 

Best of luck.