Following are some of the top colleges which accepts NATA scores:-

Sinhgad College of Architecture
Rizvi College of Architecture 
Chitkara School of Planning & Architecture
Manipal Institute of Technology
Bengal Engineering and Science University
School of Planning and Architecture
Sardar Vallabhbhai Patel Institute of Technology 
Apeejay Institute of Technology, School of Architecture & Planning
Rachana Sansad Academy of Architecture
IES College of Architecture
Dr. K. M. Vasudevan Pillai's Campus Pillai's College of Architecture 
L S Raheja School of Architecture
Kavikulguru Institute of Technology and Science.

Best of luck..