Hi there . As you are non maharashtian at time of counseling your jee mains percentile will be seen and if you score above 80% in jee mains  so you can get admission in good collges for cs branch.you can apply some of college below..

1. DY patil institute of engineering management and research,akurdi,pune

2. MIT world peace university, pune

3. VIT pune

And many more but they all will see your jee mains percentile as you are not a citizen of maharashtra.