There are numerous colleges in India offering Master's in Physiotherapy in India. MS Ramaiah Medical College is one of the best colleges for Master's in Physiotherapy. It has been ranked at 8th position in India. Hamdard Institute of Medical Sciences and Research is the other medical college offering the same. This Institute has been ranked at 11th position. However these two are private Institutes. Other colleges for the same are Father Muller Institute of Medical Education and Research, Manipal Academy of Higher Education, Indian Institute of Health Education and Research, Dr DY Patil University etc. And in government - All India Institute of Physical Medicine and Rehabilitation, Regional College of Paramedical Health Sciences, Nizams Institute of Medical Sciences,
Dr NTR University of Health Sciences etc.
Check out this link for more Information on these colleges http://medicine.careers360.com/colleges/list-of-mpt-colleges-in-india