Hi Dharaneesh,

Here is the list of deemed universities that offer B.Tech in CSE at course fee less than INR 1,00,00 which take admission with JEE Main Entrance Exam:-

• Jamia Millia Islamia, New Delhi - INR 64,600
• CMR Institute of Technology, Bangalore - INR 76,360
• Government Engineering College, Raipur - INR 82,780
• Ujjain Engineering College, Ujjain - INR 98,714
• Mizoram University, Aizawl - INR 70,900
• College of Engineering and Management, Kolaghat - INR 73,300

You may refer to this link for more information about Deemed universities with CSE course at low fees.

I hope this information helps you.

Good Luck!