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Hello,
Sorry, but JoSAA does not accept marks from two different boards for the same qualification during counselling. However, you can use your NIOS marks to meet the JEE Main/Advanced eligibility criteria if they are better than your CBSE marks. You can use your NIOS marks for the eligibility check, but when presenting your documents, you may be required to present both marksheets and the one with the higher marks for each subject will be considered.
I hope it will clear your query!!
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