Hello,
To get admission in MBA in NIPER Institute you should qualify NIPER JEE entrance exam .
Qualifying GPAT exam won't help you to get admission in MBA in NIPER Institute but will make you eligible for NIPER JEE Entrance Exam .
Once you qualify NIPER JEE  with a good score,you can apply for NIPER Counselling and pass group discussion and interview to get admission in MBA in NIPER Institute.
You can refer the below article to get better understanding about NIPER MBA.
https://bschool.careers360.com/articles/niper-jee-mba/amp

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