Hello Pankaj,

Best Government University for M.Sc in Microbiology are mentioned below:

• PU - Punjab University, Chandigarh
  
• MDU - Maharishi Dayanand University, Rohtak
• BU - Bundelkhand University, Uttar Pradesh 
• ANU - Acharya Nagarjuna University, Guntur
• GJUST - Guru Jambheshwar University of Science and Technology, Hisar
• Tripura University, Agartala
• MDSU - Maharishi Dayanand Saraswati University, Ajmer
• VBSPU - Veer Bahadur Singh Purvanchal University, Jaunpur