You will have to register separately or private/deemed university. It will be conducted by MCC. The steps follows as :-

Go toAIPMEEEThen select UG counseling tabSelect private/deemed university tabFrom the left column click on new registration and register yourselfFill your choices

Note that registration has been started from 5th July for private/deemed university. Choice filling will start from respective date and last date will be same as for AIQ counseling

Also the registration from comed-k (for private colleges of Karnataka) will be there

Hope it helps. All the best.

Assuming you are asking for NEET, so you will have to fill up a separate form for each and every private college and there will be common counseling for both state and state's private colleges.

Good Luck!!!