Hello Rupesh,
No doubt Vishwakarma University comes under Bansilal Ramnath Agarwal Charitable Trust (BRACT) but still VIT(Vishwakarma Institue of Technology ) is the flagship Institute followed by the sister Institute VIIT(Vishwakarma Institute of Information Technology ).

You should go for VIT or VIIT blindly but personally i won't suggest you to go for VU. Pune University degree which you'll receive from VIT or VIIT holds more value than VU degree.

I hope this answer helps you.