You can apply for NIPER JEE as you have a good score. Qualifying GPAT is the gateway to appear for NIPER entrance exam. If you're able to secure a good rank in NIPER JEE, then you can get into any of the NIPER's campuses. Based on your rank you can expect Bombay College of Pharmacy, Poona College of Pharmacy, Bharati Vidyapeeth University etc.