You can get the admission in Amrita Vishwa Vidyapeetham through JEE Mains exam as well. It is not that mandatory to give the AEEE exam. The college accepts the merit scored in JEE Mains, SAT and also Pearson Undergraduate Entrance Exam. JEE mains entrance exam conducted by National testing agency for admission to various engineering courses Into top institutions all over India. Candidates you have completed their 12th with the subjects like physics chemistry and mathematics are eligible for applying the exam. Amrita University Bangalore offers 30% of admission through JEE mains. As per the expected cutoff for this year through the result analysis, it is about89.75 for the general category needed for getting admission. To get CSE in any of the campuses of Amrita University, you need to score more than 97 percentile in JEE mains. But cutoffs will be different every year. Since you have 96percentile in JEE mains you have a slide chance of getting into the University.
Cut tops every year will depend upon the factors like number of candidates appeared for exam, seat availability, difficulty of examination and previous year cutoff trends. It can't be predicted whether you get in or not. But you can have hope.
Thank you.

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