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Hey !
So you want to say that in first round , you applied through AIQ and in the second round , you want to apply for deemed universities , then yes you can do so. A candidate is eligible for participating for deemed universities in round 2 provided that he/she has participated or registered in first round of counselling . And since you have done so , you are eligible. But if in second round , you will again apply under AIQ , then you will not be eligible for mop up round.
To clear all your doubts regarding NEET counselling , follow the given link :
https://medicalcounseling.nic.in/UGCounselling
After opening this link , go to the FAQs section .
Hope it helps!
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