Dear Aspirant,

First consider your interest either you want to do computer science or Electrical Engineering . I will suggest to go for IIT Bhubaneswar because it is little older than IIT Goa. Also if you interested in CSE you can apply for branch upgrade in IIT if you have good CGPA in your freshman year. IIT Bhubaneswar has good placement Stats than IIT Goa.

Best of Luck