Not a big issue because if you are an SC/ST candidate then your cast certificate is mandatory in NEET counseling otherwise only academics matters. But if I can consider your issue than that's not so big problem because there are many much ways to verify your identity. No surname, no tension but main name must be same on everywhere.

Dear sir,
It should be same on all the academics certificate but if it is without surname on your Aadhar card than it can works. In NEET counseling, all the academics certificate are mandatory to be right with full name and correct date of birth that must be same on your Aadhar card too. I hope this may help and clarify your confusion. Thank you

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