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Both the modes of exam have their pros and cons. If you are planning to write the exam in the offfline mode, then one of the advantage that you have is that you will be able to go through all the questions at one go. As far as online exam is concerned, one of the advantage is that there are less chances of printing errors.
If you are appearing for the online exam, then you have the option to edit the answer, while this option is missing if you are writing the exam in offline mode. There might be a technical glitch if you are appearing for the online exam.
Having said that, based on your prepartion, you can assess for yourself in which mode will you be most comfortable while writing the JEE Main exam and opt for that mode while appearing for the JEE Main exam.
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offline is the best. you can handle easily paper, and more comfortable than online.
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