Hello anees,

Sinhgad Institute of Management

MIT-SOM College

Pimpri Chinchwad College of Engineering

JSPMs Jayawantrao Sawant College of Engineering (JSCOE)

These are Pune colleges.
There are other colleges too , once I get I will listed here
Here is the list of best MCA colleges in Maharashtra :

1. SantGadge Baba Amravati University,Amravati

2. Dr. BabasahebNandurkar College of Physical Education , Yavatmal

3. Dr. B. A. M.University Dept. Of Management Science, Aurangabad

4. Swami RamanandTeerthMarathwadaVidyapeeth, Nanded

5. Shri V. D. Deshmukh College of MCA, Kolpa Dist. Latur

6. Veermata Jijabai Technological Institute(VJTI), Matunga, Mumbai(you need 100 percentile)