Hello Aspirant,
Some of the colleges for cse branch which takes admission through jee mains are,
1.IIIT,Hyderabad
2.NIT Warangal.
3.NIT,Trichy.
4.NSIT,Delhi
5.IIIT,Allahabad.
6.NIT,Suratkhal
7.VJTI,Mumbai
8.Institute of Technology, Nirma Univ
9.DTU
10.BIT,Mesra
Colleges are not wriiten in order of best institute,But International Institute of Information Technology ,Hyderabad is the best for CSE.

Hope it helped you, good luck....!!!