College in Maharashtra offering M.phil are-

• Shivaji University, Kolhapur
• Dayanand Science College, Latur
• RTMNU Nagpur - Rashtrasant Tukadoji Maharaj Nagpur University
• Rajaram College, Kolhapur
• TISS Mumbai - Tata Institute of Social Sciences
• Savitribai Phule Pune University, Pune

College offering pH.D. in clinical psychology in Maharashtra are-

• Amity University, Mumbai
• Tata Institute of Social Sciences, Mumbai
• Institute of Clinical Research India, Mumbai

There are many other colleges are also offering the above courses. These are the top rated colleges.
Hope this will help you.