Hello,
You can either apply for JOSAA counseling to get admission into NITs, IIITs and GFTIs through JEE Mains or other state counseling to get admission through JEE Mains.
Some of the government engineering colleges in Maharashtra which take admission through JEE Mains score are

• Veermata Jijabai Technological Institute, Mumbai
• Institute of Chemical Technology Mumbai
• Visvesvaraya National Institute of Technology Nagpur
• Government College of Engineering, Amravati
• Government College of Engineering, Karad
• Shivaji University, Kolhapur

Here's a list of more such government engineering colleges in Maharashtra which take admission through JEE Mains score.
Hope it helps

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