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Your overall marks matter, subjects marks done. If you are eligible to get into any NIT college as per that years cutoff with 100 marks, then surely you can get a seat irrespective of physics and chemistry scores.
Refer to the website below for seeing the cutoffs of various NITs -:
https://engineering.careers360.com/articles/jee-main-cutoff-for-top-nits
Best wishes. Thank you.
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