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Hello student,
Yes, you can apply for All India Quota as well as State quota for seat upgradation. Though you have got MBBS seat through State quota in Round 1 of State NEET UG counselling still you can apply for round 2 counselling in State NEET UG counseling.
Also, you can apply for All India Quota Counselling also. Applying for both State Quota Counselling and All India Quota Counselling will not effect in any way.
I hope this information was helpful to you.
All The Best!!
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