hi,

there is microbiology courses available in b.sc courses.however food microbiology is a discipline under microbiology courses. you can apply for msc in food and  microbiology courses in below mention colleges.

D Y Patil University, Maharashtra

Amity University, Gwalior

msc in food and industrial microbiology courses colleges

Babasaheb Bhimrao Ambedkar University, Lucknow

Pee Gee College of Arts and Science, Tamil Nadu

Sri Venkateswara University, Andhra Pradesh

University of Madras, Chennai

Banaras Hindu University, varanasi