Hello Dhrisya, 

Yes, you will surely get your fees refund, which you have deposited at the time of Counselling Rounds. There are two types of fees that you pay at the time, one is refundable security fees and other is for registeration, which is non-refundable. For more details you can go through the provided link.

https://www.google.com/amp/s/medicine.careers360.com/articles/neet-counselling-faqs/amp

Thank you.