Hi, the course fees for CSE in JNTUK is 45,300 rupees per year. Andhra university has not published but it would be around this amount. Both colleges are Government colleges and JNTUK has more intake in fact almost double of Andhra university.  Andhra university is a better option than JNTUK. Below is the link for you to compare your colleges and find the best fits. Hope this helps.

https://www.careers360.com/compare-colleges