Hi Shantanu! Both the colleges are good for CSE . But if we compare both the colleges on the basis of placement and syllabus there is slightly difference between two. As in last what actually matters is placement so I am giving you the suggestionn on the basis of 

1) PLACEMENTS- MSRIT has better placement as compare to PESU.MSRIT get better companies for placement PESU still behind in case of placement. The highest package of MSRIT is also much high than the PESU.

2) SYLLABUS- On comparison, the syllabus although mostly very similar, MSRIT has it slightly better . Programming languages like java ,Python are being taught well.

Atlast, I would like to say MSRIT is better than PESU.

Hope it helps.

Thanks.