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Hello Aspirant,
Firstly, in order to get admission by the councelling of MHT CET, you must appear and qualify for both MHT CET exam and JEE Mains.
You have to provide scores of both MHT CET and JEE, but MHT CET marks are given preference than the JEE score. But If Two candidates coincide, they might be compared with their JEE Mains score as well.
JEE mains score is sometimes enough to get admission.
Now, coming to your question, whichever fills the criteria to fullfil admission process, it might be JEE or MHT-CET , the official authorities will use.
Good luck
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