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Graph Algorithms in Genome Sequencing
Intermediate
Online
3 Weeks
Free Quick Facts
| Medium Of Instructions | Mode Of Learning | Mode Of Delivery |
|---|---|---|
| English | Self Study | Video and Text Based |
Courses and Certificate Fees
| Fees Informations | Certificate Availability | Certificate Providing Authority |
|---|---|---|
| INR 12572 | yes | UC San Diego |
The Syllabus
- Welcome!
- Lectures (Optional)
- Interactive Text (Powered by Stepik)
- Programming Assignment 1: Generate Contigs from a Collection of Reads
- Programming Assignment 2: Reconstruct a String from its Genome Path
- Programming Assignment 3: Construct the Overlap Graph of a Collection of k-mers
- Programming Assignment 4: Construct the de Bruijn Graph of a String
- Programming Assignment 5: Construct the de Bruijn Graph of a Collection of k-mers
- Lectures (Optional)
- Interactive Text (Powered by Stepik )
- Programming Assignment 6: Find an Eulerian Cycle in a Graph
- Programming Assignment 7: Find an Eulerian Path in a Graph
- Programming Assignment 8: Reconstruct a String from its k-mer Composition
- Programming Assignment 9: Find a k-Universal Circular String
- Lectures (Optional)
- Interactive Text (Powered by Stepik )
- Optional Assignment 1: Construct a String Spelled by a Gapped Genome Path
- Programming Assignment 10: Reconstruct a String from its Paired Composition
- Optional Assignment 2: Generate All Maximal Non-Branching Paths in a Graph
- Programming Assignment 11: Generate Contigs from a Collection of Reads
Instructors
Articles
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7 Feb'24, 11:11 AM
2 Feb'24, 04:14 AM
8 Mar'22, 10:46 AM
7 Nov'24, 06:47 AM
24 Jun'24, 05:28 AM
3 Apr'24, 05:04 AM
21 Mar'24, 12:47 PM
29 Feb'24, 05:35 AM
20 Feb'24, 06:55 AM
13 Feb'24, 06:39 AM
7 Feb'24, 11:11 AM
2 Feb'24, 04:14 AM
8 Mar'22, 10:46 AM