Difference Between Archaea and Bacteria: Overview, Similarities & Differences

Difference Between Archaea and Bacteria: Overview, Similarities & Differences

Irshad AnwarUpdated on 02 Jul 2025, 05:55 PM IST

According to modern Biological Classification, Bacteria and Archaea are two groups of prokaryotic microorganisms (meaning they do not have a nucleus or membrane-bound organelles) that may appear similar but differ in many ways. Earlier grouped together, but later scientists discovered that Archaea are genetically closer to eukaryotes than to bacteria. The difference between Archaea and Bacteria, Archaea (without peptidoglycan) and Bacteria (with peptidoglycan) is based on their cell wall composition, membrane lipids, genetic material, and habitat adaptability.

This Story also Contains

  1. What are Archaea and Bacteria?
  2. Difference between Archaea and Bacteria
  3. Genetic differences of Archaea and Bacteria
  4. What are Archaea?
  5. What are Bacteria?
  6. Archaea and Bacteria Diagram
Difference Between Archaea and Bacteria: Overview, Similarities & Differences
Difference Between Archaea and Bacteria

This article include one of the important topic of Class 11 Biology under Biological Classification as it explains the concept of variety among prokaryotes. It also shows how structural and molecular traits are used to divide living things into groups based on their evolutionary link between archaea and eukaryotes.

What are Archaea and Bacteria?

Bacteria and archaea are single-celled organisms called prokaryotes. Both of them are differentiated by structure, genetics, and metabolism. At the ecosystem level, they share decisive roles as decomposers, symbionts, and pathogens. Therefore, knowing the differences between Archaea and Bacteria is important for understanding kingdoms, evolutionary history, and ecological dynamics to identify their potential for biotechnology and medicine.

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Difference between Archaea and Bacteria

The difference between Archaea and Bacteria is a key concept in understanding microbial diversity in biology. Some basic difference between Archae and bacteria is discussed below:

Feature

Archaea

Bacteria

Cell Wall

They do not have peptidoglycan and may have pseudopeptidoglycan or protein layers.

They contain peptidoglycan, a polymer of sugars and amino acids.

Cell Membrane

They are made of ether-linked lipids with branched chains.

They are made of ester-linked lipids with straight chains.

Flagella

Thinner, made of different proteins; unique motility mechanism.

Thicker, made of flagellin protein; rotary motor mechanism.

Habitat

Often found in extreme environments like hot springs, salt lakes, and deep-sea vents.

Found in diverse environments, including soil, water, and host organisms.

Antibiotic Sensitivity

Generally resistant to antibiotics.

Sensitive to many antibiotics.

Genetic differences of Archaea and Bacteria

The genetic makeup of Archaea and Bacteria reveals important molecular differences that set them apart, despite both being prokaryotes. Archaea and Bacteria exhibit notable differences in their genetic and molecular processes:

Genomic Organisation

  • As with eukaryotes, introns are common in archaeal but not bacterial genomes.

  • Along with the chromatin structure of their DNA, which resembles that of eukaryotes, with histone-like proteins, rather than the other proteins that associate with bacterial DNA.

DNA Replication, Transcription, and Translation Differences

  • Archaea use a class of enzymes for replicating DNA that are eukaryotic-like; bacteria have their distinct replication machinery.

  • Transcription and translation apparatus in Archaea include evolutionarily unique RNA polymerases as well as ribosomal proteins in the Archaea concerning Bacteria.

RNA Polymerase Structure and Function

  • Archaeal RNA polymerases are more closely related to eukaryotic RNA polymerases than to bacterial RNA polymerases.

  • They exhibit differences in promoter recognition and transcription regulation compared to bacterial RNA polymerases.

What are Archaea?

Archaea are small, single-celled microorganisms, one of the three domains of life, the other two being Bacteria and Eukaryotes. Its existence was discovered in the 1970s when initially, it was thought of as Bacteria since they are prokaryotic but later it was realised that it is a different group based on genetic and biochemical distinctions. Some of the basic points are discussed below:

  • It possesses a unique type of cell membrane lipid called ether-linked phospholipid, unlike the Bacteria that have ester-linked phospholipid.

  • These microorganisms are extremophile class, as they thrive in extreme environments that include hot springs, salt lakes, and deep-sea hydrothermal vents.

  • They show highly diverse metabolic pathways, for example, methanogenesis, production of methane and various extremophilic adaptations - for thermophiles or halophiles, for example.

Examples of Archaea

  • Methanogens: These occur in anaerobic environments like swamps and the guts of animals, and they excrete methane due to their metabolism.

  • Thermophiles: This is an extremophilic species that dwells in the higher temperatures that are found in hot springs and geothermal areas.

  • Halophiles: Grow well in salt-rich surroundings such as salt lakes and hypersaline.

What are Bacteria?

Bacteria are unicelled prokaryotic microorganisms that relate to the domain Bacteria. The first bacteria was discovered by Antonie van Leeuwenhoek in the 17th century. This laid the foundation for microbiology. Some of the basics are discussed below:

  • The cell wall of the bacterium is mainly composed of peptidoglycan.

  • Bacteria reproduce asexually by binary fission.

  • The metabolic pathways of bacteria are very diverse, including aerobic and anaerobic respiration, fermentation, and photosynthesis.

  • They exist everywhere in the environment: soil, water, and living tissues of organisms.

Examples of Bacteria

  • Escherichia coli, or E. coli: The bacterium is found in the intestines of humans and other animals. It has a role in digestion.

  • Staphylococcus aureus: This is a bacteria responsible for skin infection and, at times, serious diseases.

  • Cyanobacteria: The photosynthetic bacteria whose photosynthesis byproduct is oxygen. They have, in fact greatly, contributed to the Earth's Atmosphere and Aquatic Ecosystem.

Archaea and Bacteria Diagram

The diagram below shows the cells of Archaea and bacteria. It highlights the key differences in their cell walls, membranes, and surface features.

cells of Archaea and bacteria

Other useful resources:

Frequently Asked Questions (FAQs)

Q: How do scientists differentiate between Archaea and Bacteria in the lab?
A:

Archaea and Bacteria are differentiated by sequencing of the genes of ribosomal RNA, owing to specific staining methods, and by analysis of membrane lipids.

Q: Can Archaea cause diseases like some Bacteria?
A:

So far, there have been no pathogenic Archaea identified. Many Bacteria, however, are known to cause diseases in humans, animals, and plants.

Q: Why are Archaea often found in extreme environments?
A:

Since no other type of organism shows such extremity, archaea have developed very particular adaptations-like specialised enzymes or even different membrane lipids-to be able to survive at high temperatures, high acidity, or high salinity.

Q: What is the main difference between Archaea and Bacteria?
A:

The cell wall composition, membrane lipids, and genetic machinery are the major differences.

Q: How do Archaea and Bacteria differ in their habitats?
A:

Archaea is mostly in extreme environments such as hot springs or salt lakes. Bacteria are found almost everywhere, soil, water, and inside other organisms.